RNAdex
RNAdex contains 462,755 structural motif entries from 5,846 PDB structures — enabling researchers to search, visualize, and download atomic-level RNA structures.
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RNAdex contains 462,755 structural motif entries from 5,846 PDB structures — enabling researchers to search, visualize, and download atomic-level RNA structures.
RNAdex is a comprehensive 3D RNA motif library that extracts and catalogs RNA structural motifs from the Protein Data Bank using graph-based algorithms. It provides researchers with tools for type-based search, custom graph-based structural search via subgraph isomorphism, and atomic-level 3D coordinate downloads for accurate RNA structural analysis.
Choose a search method below
Search by motif type and size from pre-indexed database
Draw your own motif and find matching RNA structures via subgraph isomorphism; three worked examples show how candidates are retrieved and structurally validated
Distribution of motif types and sizes in RNAdex
For questions, support, or feedback about the RNAdex database
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Department of Neurology
Department of Neuroscience
Department of Biomedical Engineering
Department of Microbiology, Immunology, & Cancer Biology
University of Virginia